Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1035836	1.00[AMR][1000 genomes]
rs1365892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405616	1.00[AMR][1000 genomes]
rs1427488	1.00[EUR][1000 genomes]
rs1469364	1.00[AMR][1000 genomes]
rs1559952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2114727	1.00[AMR][1000 genomes]
rs213265	1.00[EUR][1000 genomes]
rs213266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213269	1.00[AMR][1000 genomes]
rs213277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213278	1.00[EUR][1000 genomes]
rs2704288	1.00[AMR][1000 genomes]
rs35476249	1.00[AMR][1000 genomes]
rs57820243	1.00[EUR][1000 genomes]
rs58218896	1.00[EUR][1000 genomes]
rs58844869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305223	1.00[EUR][1000 genomes]
rs73309549	1.00[AMR][1000 genomes]
rs7804740	1.00[EUR][1000 genomes]
rs801757	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801761	0.91[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18473200-18497200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:18482800-18498400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:18490200-18497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:18492200-18497600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:18492200-18498400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:18492400-18498400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:18492600-18497400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:18493600-18497600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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