Variant report

Variant	rs7804740
Chromosome Location	chr7:18466988-18466989
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1365892	1.00[EUR][1000 genomes]
rs1427488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1559952	1.00[EUR][1000 genomes]
rs213265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213266	1.00[EUR][1000 genomes]
rs213267	1.00[EUR][1000 genomes]
rs213268	1.00[EUR][1000 genomes]
rs213277	1.00[EUR][1000 genomes]
rs213278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57820243	1.00[EUR][1000 genomes]
rs58218896	1.00[EUR][1000 genomes]
rs58844869	1.00[EUR][1000 genomes]
rs59534338	1.00[EUR][1000 genomes]
rs59672464	1.00[EUR][1000 genomes]
rs61004165	1.00[EUR][1000 genomes]
rs73305223	1.00[EUR][1000 genomes]
rs801761	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18445600-18482000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:18445800-18467000	Weak transcription	Primary B cells from cord blood	blood
3	chr7:18447200-18468200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:18448200-18467800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:18460800-18468400	Weak transcription	Pancreas	Pancrea
6	chr7:18462000-18468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:18462400-18468600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:18462400-18469000	Weak transcription	Aorta	Aorta
9	chr7:18465000-18467200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:18465200-18467000	Enhancers	Fetal Stomach	stomach
11	chr7:18465400-18467200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:18465600-18467000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:18465600-18467000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:18465600-18467000	Enhancers	NHDF-Ad	bronchial
15	chr7:18465600-18467000	Enhancers	Osteobl	bone
16	chr7:18465600-18467200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:18465600-18467200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr7:18465600-18467200	Enhancers	Colon Smooth Muscle	Colon
19	chr7:18465800-18467000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:18465800-18467200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:18465800-18467200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:18465800-18467400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:18465800-18467400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:18466000-18467000	Flanking Active TSS	HUVEC	blood vessel
25	chr7:18466200-18467000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:18466200-18467000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr7:18466200-18467000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:18466200-18467000	Enhancers	Rectal Smooth Muscle	rectum
29	chr7:18466200-18467000	Enhancers	NH-A	brain
30	chr7:18466200-18467000	Enhancers	NHEK	skin
31	chr7:18466200-18467600	Enhancers	HMEC	breast
32	chr7:18466400-18467000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr7:18466400-18467000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:18466400-18467000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:18466400-18467000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:18466400-18469000	Weak transcription	Hela-S3	cervix
37	chr7:18466600-18467000	Enhancers	NHLF	lung
38	chr7:18466800-18467000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr7:18466800-18468400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr7:18466800-18468400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:18466800-18468600	Weak transcription	HSMM	muscle

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