Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1035836	1.00[AMR][1000 genomes]
rs1365892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405616	1.00[AMR][1000 genomes]
rs1427488	1.00[EUR][1000 genomes]
rs1469364	1.00[AMR][1000 genomes]
rs1559952	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2114727	1.00[AMR][1000 genomes]
rs213265	1.00[EUR][1000 genomes]
rs213266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213269	1.00[AMR][1000 genomes]
rs213278	1.00[EUR][1000 genomes]
rs2704288	1.00[AMR][1000 genomes]
rs35476249	1.00[AMR][1000 genomes]
rs58218896	1.00[EUR][1000 genomes]
rs58844869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305223	1.00[EUR][1000 genomes]
rs73309549	1.00[AMR][1000 genomes]
rs7804740	1.00[EUR][1000 genomes]
rs801757	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs801761	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs213277	HDAC9	cis	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18505400-18531200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr7:18509600-18514600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:18511200-18512800	Enhancers	Left Ventricle	heart
4	chr7:18511400-18512600	Weak transcription	Fetal Heart	heart
5	chr7:18511400-18514200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:18511400-18514400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:18511600-18513600	Weak transcription	Brain Substantia Nigra	brain
8	chr7:18511600-18514600	Weak transcription	Brain Angular Gyrus	brain
9	chr7:18511600-18514600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:18511600-18534600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:18511800-18512600	Strong transcription	Primary B cells from cord blood	blood

Quick Search: