Variant report

Variant	rs58844869
Chromosome Location	chr7:18595213-18595214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1035836	1.00[AMR][1000 genomes]
rs1365892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405616	1.00[AMR][1000 genomes]
rs1427488	1.00[EUR][1000 genomes]
rs1469364	1.00[AMR][1000 genomes]
rs1559952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2114727	1.00[AMR][1000 genomes]
rs213265	1.00[EUR][1000 genomes]
rs213266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213269	1.00[AMR][1000 genomes]
rs213277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs213278	1.00[EUR][1000 genomes]
rs2704288	1.00[AMR][1000 genomes]
rs35476249	1.00[AMR][1000 genomes]
rs58218896	1.00[EUR][1000 genomes]
rs73309549	1.00[AMR][1000 genomes]
rs7804740	1.00[EUR][1000 genomes]
rs801757	1.00[AMR][1000 genomes]
rs801761	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18561000-18598000	Weak transcription	HMEC	breast
2	chr7:18574600-18598400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:18581200-18600400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:18581600-18620200	Weak transcription	HSMMtube	muscle
5	chr7:18586000-18598400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:18590600-18597800	Weak transcription	Fetal Heart	heart
7	chr7:18590600-18598400	Weak transcription	Psoas Muscle	Psoas
8	chr7:18592200-18595600	Enhancers	Hela-S3	cervix
9	chr7:18593000-18598400	Weak transcription	Left Ventricle	heart
10	chr7:18593000-18598600	Weak transcription	Aorta	Aorta
11	chr7:18593000-18606400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr7:18593200-18595800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:18593200-18597600	Weak transcription	HUVEC	blood vessel
14	chr7:18593200-18598200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr7:18593200-18600800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:18593400-18598000	Weak transcription	Primary B cells from cord blood	blood
17	chr7:18593600-18596600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:18593600-18597600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:18593600-18605000	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:18593600-18605800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:18593800-18595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:18593800-18596400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:18594400-18595600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:18594400-18595800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:18594400-18596200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:18594400-18596200	Enhancers	Osteobl	bone
27	chr7:18595000-18596400	Enhancers	NH-A	brain
28	chr7:18595200-18596200	Weak transcription	NHDF-Ad	bronchial
29	chr7:18595200-18596200	Enhancers	NHEK	skin
30	chr7:18595200-18598600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:18595200-18600400	Weak transcription	Muscle Satellite Cultured Cells	--

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