Variant report

Variant	rs1483178
Chromosome Location	chr8:63129740-63129741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10094813	0.81[ASN][1000 genomes]
rs10096468	0.83[ASN][1000 genomes]
rs10098905	0.81[EUR][1000 genomes]
rs10108722	0.81[ASN][1000 genomes]
rs1483182	0.81[ASN][1000 genomes]
rs2351643	0.85[ASN][1000 genomes]
rs2351644	0.81[ASN][1000 genomes]
rs4738940	0.84[ASN][1000 genomes]
rs6471997	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7002834	0.81[EUR][1000 genomes]
rs900493	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016883	chr8:63110741-63171354	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030749	chr8:63114461-63156246	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63128000-63130600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:63128600-63130000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:63129200-63129800	Flanking Active TSS	A549	lung
4	chr8:63129200-63130400	Enhancers	NH-A	brain
5	chr8:63129400-63129800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:63129400-63130600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:63129600-63130200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:63129600-63130400	Enhancers	HSMMtube	muscle
9	chr8:63129600-63130600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:63129600-63131400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:63129600-63131400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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