Variant report

Variant	rs4738940
Chromosome Location	chr8:63074441-63074442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10094813	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10096468	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10098905	0.93[EUR][1000 genomes]
rs10108722	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10110503	0.91[ASN][1000 genomes]
rs1384680	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1483178	0.84[ASN][1000 genomes]
rs1483181	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1483182	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1601060	0.87[ASN][1000 genomes]
rs1825308	0.93[ASN][1000 genomes]
rs2351436	0.92[ASN][1000 genomes]
rs2351643	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351644	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471997	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7002834	0.93[EUR][1000 genomes]
rs900493	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4738940	LOC643763	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63072200-63075400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:63072600-63076400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:63073200-63074600	Enhancers	Hela-S3	cervix
4	chr8:63073800-63074800	Enhancers	A549	lung
5	chr8:63074000-63076400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:63074400-63075000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:63074400-63075400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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