Variant report

Variant	rs2351436
Chromosome Location	chr8:63054725-63054726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10094813	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10096468	0.88[ASN][1000 genomes]
rs10108722	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10110503	0.99[ASN][1000 genomes]
rs1384680	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483181	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483182	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1601060	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1825308	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2351643	0.93[ASN][1000 genomes]
rs2351644	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738940	0.92[ASN][1000 genomes]
rs6471997	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs900493	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3379068	chr8:63053475-63058195	ZNF genes & repeats Enhancers Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63052000-63055800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:63054000-63054800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:63054600-63060600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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