Variant report

Variant	rs10110503
Chromosome Location	chr8:63051531-63051532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10094813	0.96[ASN][1000 genomes]
rs10096468	0.87[ASN][1000 genomes]
rs10108722	0.96[ASN][1000 genomes]
rs1384680	0.99[ASN][1000 genomes]
rs1483181	0.94[ASN][1000 genomes]
rs1483182	0.96[ASN][1000 genomes]
rs1601060	0.94[ASN][1000 genomes]
rs1825308	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1947951	0.85[EUR][1000 genomes]
rs2351436	0.99[ASN][1000 genomes]
rs2351643	0.92[ASN][1000 genomes]
rs2351644	0.96[ASN][1000 genomes]
rs4738940	0.91[ASN][1000 genomes]
rs6471997	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs900493	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63050400-63051600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:63051000-63051800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:63051000-63053000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:63051200-63052800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:63051200-63052800	Enhancers	A549	lung
6	chr8:63051200-63052800	Enhancers	HepG2	liver
7	chr8:63051400-63051800	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links