Variant report

Variant	rs1486015
Chromosome Location	chr4:81454754-81454755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1352077	0.81[AFR][1000 genomes]
rs1486021	0.81[AFR][1000 genomes]
rs34306570	0.80[EUR][1000 genomes]
rs34525333	0.95[EUR][1000 genomes]
rs34975597	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs58341968	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59789768	0.82[EUR][1000 genomes]
rs72874083	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72874087	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7696162	0.81[AFR][1000 genomes]
rs989123	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1486015	ANKRD56	cis	parietal	SCAN
rs1486015	SCD5	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81453200-81455200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:81453400-81455400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:81453600-81455200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:81453800-81454800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:81454200-81454800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr4:81454200-81455000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:81454600-81455200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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