Variant report

Variant	rs59789768
Chromosome Location	chr4:81453357-81453358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10033938	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1038530	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1038531	0.81[AMR][1000 genomes]
rs11725262	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11732907	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11940084	0.89[AMR][1000 genomes]
rs12650380	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1352077	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1486015	0.82[EUR][1000 genomes]
rs1486021	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1486027	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1486030	0.85[AMR][1000 genomes]
rs1601512	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1601513	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17004933	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2132264	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2867780	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2867782	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34306570	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34975597	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4146323	0.85[AMR][1000 genomes]
rs4283653	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4693062	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4693510	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4693531	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6535031	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6535040	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6535041	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72874049	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72874070	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72874077	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72874089	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72874098	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7696162	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs923178	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs971728	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81451000-81453600	Weak transcription	Fetal Lung	lung
2	chr4:81453200-81454200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:81453200-81454400	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:81453200-81455200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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