Variant report

Variant	rs11725262
Chromosome Location	chr4:81377149-81377150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10033938	0.84[AMR][1000 genomes]
rs1038531	1.00[AFR][1000 genomes]
rs11732907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940084	0.81[AMR][1000 genomes]
rs1601512	0.84[AMR][1000 genomes]
rs1601513	0.84[AMR][1000 genomes]
rs17004933	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2132264	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34306570	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34656528	1.00[AFR][1000 genomes]
rs34975597	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4283653	0.84[AMR][1000 genomes]
rs59789768	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6535040	0.84[AMR][1000 genomes]
rs6535041	0.84[AMR][1000 genomes]
rs72874049	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72874070	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72874077	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72874089	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72874098	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81376000-81377400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:81376200-81377200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:81376200-81377400	Weak transcription	HMEC	breast
5	chr4:81376200-81380800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:81376200-81380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:81376200-81381400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:81376200-81386400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:81376400-81377400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:81376400-81380400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:81376400-81380800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:81376400-81380800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:81376400-81381200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:81376400-81382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:81376400-81382200	Weak transcription	Placenta	Placenta
16	chr4:81376600-81380600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:81376600-81380800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:81376600-81380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:81376600-81381000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:81377000-81378000	Enhancers	NHEK	skin

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