Variant report

Variant	rs72874083
Chromosome Location	chr4:81432934-81432935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1486015	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34525333	0.92[EUR][1000 genomes]
rs58341968	0.92[EUR][1000 genomes]
rs72874070	0.82[EUR][1000 genomes]
rs72874077	0.82[EUR][1000 genomes]
rs72874087	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72874089	0.82[EUR][1000 genomes]
rs72874098	0.82[EUR][1000 genomes]
rs989123	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81430400-81434200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:81430400-81434400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:81430600-81434200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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