Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10782606	1.00[JPT][hapmap]
rs10873867	0.89[JPT][hapmap]
rs10873869	1.00[JPT][hapmap]
rs10873871	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162090	1.00[JPT][hapmap]
rs12048024	1.00[JPT][hapmap]
rs12064344	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414403	1.00[JPT][hapmap]
rs1414406	1.00[JPT][hapmap]
rs1473472	1.00[JPT][hapmap]
rs1486933	1.00[JPT][hapmap]
rs17098360	0.81[ASN][1000 genomes]
rs1999734	1.00[JPT][hapmap]
rs3011990	1.00[JPT][hapmap]
rs370016	1.00[JPT][hapmap]
rs370808	0.89[JPT][hapmap]
rs393933	0.89[JPT][hapmap]
rs402394	1.00[JPT][hapmap]
rs404652	0.89[JPT][hapmap]
rs409979	0.88[JPT][hapmap]
rs413350	1.00[JPT][hapmap]
rs425110	0.89[JPT][hapmap]
rs442486	0.89[JPT][hapmap]
rs448003	0.86[JPT][hapmap]
rs450133	1.00[JPT][hapmap]
rs473380	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs479650	1.00[JPT][hapmap]
rs519797	0.89[JPT][hapmap]
rs531773	0.89[JPT][hapmap]
rs533097	0.89[JPT][hapmap]
rs536913	0.89[JPT][hapmap]
rs560520	0.86[JPT][hapmap]
rs569850	0.89[JPT][hapmap]
rs572623	0.89[JPT][hapmap]
rs573657	0.89[JPT][hapmap]
rs580928	0.89[JPT][hapmap]
rs638593	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1486931	TNNI3K	cis	cerebellum	SCAN
rs1486931	USP33	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76683800-76686800	Enhancers	Fetal Thymus	thymus
2	chr1:76684000-76686600	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:76685400-76686600	Enhancers	Primary B cells from cord blood	blood
4	chr1:76686200-76686800	Enhancers	Primary neutrophils fromperipheralblood	blood

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