Variant report

Variant	rs11162090
Chromosome Location	chr1:76626260-76626261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1032185	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782606	1.00[JPT][hapmap]
rs10873867	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs10873869	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162091	0.88[YRI][hapmap]
rs11162092	1.00[CHB][hapmap]
rs11162095	1.00[CHB][hapmap]
rs11162096	1.00[CHB][hapmap]
rs12048024	1.00[JPT][hapmap]
rs1414403	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1414406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1473472	1.00[JPT][hapmap]
rs1486931	1.00[JPT][hapmap]
rs1486933	1.00[JPT][hapmap]
rs1591472	1.00[CHB][hapmap]
rs17098221	0.83[ASN][1000 genomes]
rs17098239	0.83[ASN][1000 genomes]
rs1970226	0.86[ASN][1000 genomes]
rs1999734	0.92[CEU][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2783657	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3011990	1.00[JPT][hapmap]
rs370016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs370808	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs370908	0.98[ASN][1000 genomes]
rs393933	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs402394	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs404652	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs409312	0.90[ASN][1000 genomes]
rs409979	1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs411398	0.98[ASN][1000 genomes]
rs413350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs425110	1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs429265	0.98[ASN][1000 genomes]
rs442486	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs448003	1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs450133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs450636	0.86[ASN][1000 genomes]
rs473380	1.00[JPT][hapmap]
rs479650	1.00[JPT][hapmap]
rs4949696	1.00[CHB][hapmap]
rs4949697	1.00[CHB][hapmap]
rs519797	0.89[JPT][hapmap]
rs531773	0.89[JPT][hapmap]
rs533097	0.89[JPT][hapmap]
rs536913	0.89[JPT][hapmap]
rs560520	0.86[JPT][hapmap]
rs569850	0.89[JPT][hapmap]
rs572623	0.89[JPT][hapmap]
rs573657	0.89[JPT][hapmap]
rs580928	0.89[JPT][hapmap]
rs638593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7556363	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76620600-76627800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:76620800-76627800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:76621000-76627000	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:76621000-76627600	Weak transcription	Fetal Lung	lung
6	chr1:76621000-76630600	Weak transcription	Psoas Muscle	Psoas
7	chr1:76621000-76630800	Weak transcription	Primary B cells from cord blood	blood
8	chr1:76625200-76626400	Enhancers	Primary T cells from cord blood	blood
9	chr1:76626000-76627800	Enhancers	Fetal Intestine Small	intestine
10	chr1:76626200-76626600	Enhancers	Fetal Intestine Large	intestine

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