Variant report

Variant	rs11162091
Chromosome Location	chr1:76626532-76626533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10873867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162090	0.88[YRI][hapmap]
rs11162092	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11162093	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162095	1.00[CEU][hapmap];0.80[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11162096	0.96[CEU][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162097	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12024701	0.87[EUR][1000 genomes]
rs12048024	0.89[EUR][1000 genomes]
rs12048928	0.96[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs12402760	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12563461	0.96[CEU][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12731715	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1318243	0.85[LWK][hapmap]
rs1486934	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs1486935	0.96[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs1591472	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1601640	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2631796	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2706193	0.87[EUR][1000 genomes]
rs2783985	1.00[CEU][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3011990	0.89[JPT][hapmap]
rs413350	1.00[CHB][hapmap]
rs479650	0.89[JPT][hapmap]
rs4949696	1.00[CEU][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4949697	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs519797	0.90[JPT][hapmap]
rs531773	0.90[JPT][hapmap]
rs533097	0.90[JPT][hapmap]
rs536913	0.90[JPT][hapmap]
rs560520	0.88[JPT][hapmap]
rs569850	0.90[JPT][hapmap]
rs572623	0.90[JPT][hapmap]
rs573657	0.90[JPT][hapmap]
rs580928	0.90[JPT][hapmap]
rs7534207	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7539882	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7542080	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7556363	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76620600-76627800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:76620800-76627800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:76621000-76627000	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:76621000-76627600	Weak transcription	Fetal Lung	lung
6	chr1:76621000-76630600	Weak transcription	Psoas Muscle	Psoas
7	chr1:76621000-76630800	Weak transcription	Primary B cells from cord blood	blood
8	chr1:76626000-76627800	Enhancers	Fetal Intestine Small	intestine
9	chr1:76626200-76626600	Enhancers	Fetal Intestine Large	intestine

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