Variant report

Variant	rs1486934
Chromosome Location	chr1:76673347-76673348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10873867	0.93[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10873869	1.00[CHB][hapmap]
rs11162091	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs11162092	0.93[CEU][hapmap];0.80[JPT][hapmap]
rs11162093	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11162095	0.96[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11162096	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11162097	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12024701	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035017	0.82[JPT][hapmap]
rs12048024	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12402760	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12563461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12731715	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591472	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1601640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999734	1.00[CHB][hapmap]
rs2631796	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2706193	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2783985	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3011990	0.89[JPT][hapmap]
rs413350	0.89[JPT][hapmap]
rs479650	1.00[JPT][hapmap]
rs4949696	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4949697	0.96[CEU][hapmap];0.90[JPT][hapmap]
rs519797	0.90[JPT][hapmap]
rs531773	0.90[JPT][hapmap]
rs533097	0.90[JPT][hapmap]
rs536913	0.90[JPT][hapmap]
rs560520	0.88[JPT][hapmap]
rs569850	0.90[JPT][hapmap]
rs572623	0.90[JPT][hapmap]
rs573657	0.90[JPT][hapmap]
rs580928	0.90[JPT][hapmap]
rs7534207	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7539882	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7542080	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7556363	0.93[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76666400-76675000	Weak transcription	Aorta	Aorta
2	chr1:76666800-76673800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76673000-76675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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