Variant report

Variant	rs11162096
Chromosome Location	chr1:76647243-76647244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10873867	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162090	1.00[CHB][hapmap]
rs11162091	0.96[CEU][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162092	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11162093	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162095	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11162097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024701	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12048024	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12048928	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12402760	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563461	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12731715	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414403	1.00[CHB][hapmap]
rs1414406	1.00[CHB][hapmap]
rs1486934	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486935	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591472	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1601640	1.00[CEU][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2631796	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706193	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2783985	0.96[CEU][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs370016	1.00[CHB][hapmap]
rs370808	1.00[CHB][hapmap]
rs393933	1.00[CHB][hapmap]
rs402394	1.00[CHB][hapmap]
rs404652	1.00[CHB][hapmap]
rs409979	1.00[CHB][hapmap]
rs413350	1.00[CHB][hapmap]
rs425110	1.00[CHB][hapmap]
rs442486	1.00[CHB][hapmap]
rs448003	1.00[CHB][hapmap]
rs450133	1.00[CHB][hapmap]
rs479650	0.89[JPT][hapmap]
rs4949696	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4949697	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs519797	0.81[JPT][hapmap]
rs531773	0.81[JPT][hapmap]
rs533097	0.81[JPT][hapmap]
rs536913	0.81[JPT][hapmap]
rs569850	0.81[JPT][hapmap]
rs572623	0.81[JPT][hapmap]
rs573657	0.81[JPT][hapmap]
rs580928	0.81[JPT][hapmap]
rs638593	1.00[CHB][hapmap]
rs7534207	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7542080	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556363	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76636600-76652800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76643800-76651800	Weak transcription	Fetal Kidney	kidney
3	chr1:76644400-76651000	Weak transcription	Fetal Lung	lung
4	chr1:76644800-76653200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:76645400-76652600	Weak transcription	HUVEC	blood vessel
6	chr1:76646600-76652600	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
8	chr1:76646800-76647400	Weak transcription	Ovary	ovary
9	chr1:76646800-76648000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:76646800-76652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:76646800-76653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links