Variant report

Variant	rs4949697
Chromosome Location	chr1:76652957-76652958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10873867	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162090	1.00[CHB][hapmap]
rs11162091	0.92[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162092	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11162093	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162095	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11162096	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162097	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024701	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12048024	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12048928	0.96[CEU][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12402760	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563461	0.96[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12731715	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414403	1.00[CHB][hapmap]
rs1414406	1.00[CHB][hapmap]
rs1486934	0.96[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486935	0.96[CEU][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591472	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1601640	0.96[CEU][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2631796	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2706193	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2783985	0.92[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs370016	1.00[CHB][hapmap]
rs370808	1.00[CHB][hapmap]
rs393933	1.00[CHB][hapmap]
rs402394	1.00[CHB][hapmap]
rs404652	1.00[CHB][hapmap]
rs409979	1.00[CHB][hapmap]
rs413350	1.00[CHB][hapmap]
rs425110	1.00[CHB][hapmap]
rs442486	1.00[CHB][hapmap]
rs448003	1.00[CHB][hapmap]
rs450133	1.00[CHB][hapmap]
rs479650	0.89[JPT][hapmap]
rs4949696	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs519797	0.81[JPT][hapmap]
rs531773	0.81[JPT][hapmap]
rs533097	0.81[JPT][hapmap]
rs536913	0.81[JPT][hapmap]
rs569850	0.81[JPT][hapmap]
rs572623	0.81[JPT][hapmap]
rs573657	0.81[JPT][hapmap]
rs580928	0.81[JPT][hapmap]
rs638593	1.00[CHB][hapmap]
rs7534207	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7542080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556363	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76644800-76653200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
3	chr1:76646800-76653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:76651800-76653000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:76651800-76653000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:76651800-76653600	Enhancers	Brain Anterior Caudate	brain
8	chr1:76652000-76654600	Weak transcription	Aorta	Aorta
9	chr1:76652400-76653200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:76652400-76653600	Enhancers	Fetal Brain Male	brain
11	chr1:76652400-76654800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:76652600-76653000	Enhancers	Brain Hippocampus Middle	brain
13	chr1:76652600-76653400	Enhancers	Brain Cingulate Gyrus	brain
14	chr1:76652600-76653600	Enhancers	Brain Angular Gyrus	brain

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