Variant report

Variant	rs10873869
Chromosome Location	chr1:76672622-76672623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1032185	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10782606	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10873867	0.89[JPT][hapmap]
rs10873870	0.82[ASN][1000 genomes]
rs11162090	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12048024	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12048928	1.00[CHB][hapmap]
rs12563461	1.00[CHB][hapmap]
rs1414403	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1414406	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1473472	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1486931	1.00[JPT][hapmap]
rs1486933	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1486934	1.00[CHB][hapmap]
rs1486935	1.00[CHB][hapmap]
rs1601640	1.00[CHB][hapmap]
rs17098252	0.83[ASN][1000 genomes]
rs17098360	0.85[ASN][1000 genomes]
rs1970226	0.95[ASN][1000 genomes]
rs1999734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065795	0.82[ASN][1000 genomes]
rs2783985	1.00[CHB][hapmap]
rs3011990	1.00[JPT][hapmap]
rs370016	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs370808	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs370908	0.83[ASN][1000 genomes]
rs393933	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs402394	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs404652	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs409312	0.90[ASN][1000 genomes]
rs409979	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs411398	0.83[ASN][1000 genomes]
rs413350	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs425110	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs429265	0.83[ASN][1000 genomes]
rs442486	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs448003	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs450133	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs450636	0.95[ASN][1000 genomes]
rs473380	1.00[JPT][hapmap]
rs475686	0.88[ASN][1000 genomes]
rs479650	1.00[JPT][hapmap]
rs519797	0.89[JPT][hapmap]
rs531773	0.89[JPT][hapmap]
rs533097	0.89[JPT][hapmap]
rs536913	0.89[JPT][hapmap]
rs560520	0.86[JPT][hapmap]
rs569850	0.89[JPT][hapmap]
rs572623	0.89[JPT][hapmap]
rs573657	0.89[JPT][hapmap]
rs580928	0.89[JPT][hapmap]
rs638593	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6674758	0.82[ASN][1000 genomes]
rs7414129	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76666400-76675000	Weak transcription	Aorta	Aorta
2	chr1:76666800-76673800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76672400-76673200	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links