Variant report
| Variant | rs2065795 |
|---|---|
| Chromosome Location | chr1:76677972-76677973 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10782606 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10873869 | 0.82[ASN][1000 genomes] |
| rs10873870 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1473472 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1486933 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1999734 | 0.82[ASN][1000 genomes] |
| rs3011990 | 0.87[ASN][1000 genomes] |
| rs479650 | 0.87[ASN][1000 genomes] |
| rs482598 | 0.81[ASN][1000 genomes] |
| rs483441 | 0.85[ASN][1000 genomes] |
| rs495796 | 0.83[EUR][1000 genomes] |
| rs503329 | 0.87[ASN][1000 genomes] |
| rs517036 | 0.82[EUR][1000 genomes] |
| rs519797 | 0.81[ASN][1000 genomes] |
| rs527924 | 0.82[EUR][1000 genomes] |
| rs527974 | 0.87[ASN][1000 genomes] |
| rs531773 | 0.87[ASN][1000 genomes] |
| rs533097 | 0.87[ASN][1000 genomes] |
| rs536913 | 0.82[ASN][1000 genomes] |
| rs560520 | 0.87[ASN][1000 genomes] |
| rs567250 | 0.82[EUR][1000 genomes] |
| rs569850 | 0.85[ASN][1000 genomes] |
| rs572623 | 0.85[ASN][1000 genomes] |
| rs573657 | 0.85[ASN][1000 genomes] |
| rs580390 | 0.83[EUR][1000 genomes] |
| rs6671258 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6674758 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7414129 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv870621 | chr1:76620313-76997071 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1801297 | chr1:76673530-76686142 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:76676800-76678200 | Weak transcription | Thymus | Thymus |
| 2 | chr1:76676800-76683800 | Weak transcription | Fetal Thymus | thymus |
