Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782606	0.81[ASN][1000 genomes]
rs10873870	0.81[ASN][1000 genomes]
rs1473472	0.81[ASN][1000 genomes]
rs1486933	0.81[ASN][1000 genomes]
rs2065795	0.81[ASN][1000 genomes]
rs3011990	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs479650	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs483441	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs503329	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs519797	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs527974	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs531773	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs533097	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs536913	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs560520	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs569850	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs572623	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs573657	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6671258	0.81[ASN][1000 genomes]
rs6674758	0.81[ASN][1000 genomes]
rs7414129	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1008763	chr1:76692057-76723417	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1001452	chr1:76692057-76724652	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76687400-76695000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76689000-76693800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:76690000-76694800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:76692000-76694400	Weak transcription	HUVEC	blood vessel
5	chr1:76692200-76693000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:76692200-76693000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:76692200-76693800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:76692200-76696000	Enhancers	Fetal Thymus	thymus
9	chr1:76692400-76693000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:76692400-76695600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:76692400-76698200	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search: