Variant report

Variant	rs1473472
Chromosome Location	chr1:76680186-76680187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10782606	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873867	0.89[JPT][hapmap]
rs10873869	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10873870	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162090	1.00[JPT][hapmap]
rs12048024	1.00[JPT][hapmap]
rs1414403	1.00[JPT][hapmap]
rs1414406	1.00[JPT][hapmap]
rs1486931	1.00[JPT][hapmap]
rs1486933	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999734	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2065795	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3011990	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs370016	1.00[JPT][hapmap]
rs370808	0.89[JPT][hapmap]
rs393933	0.89[JPT][hapmap]
rs402394	1.00[JPT][hapmap]
rs404652	0.89[JPT][hapmap]
rs409979	0.88[JPT][hapmap]
rs413350	1.00[JPT][hapmap]
rs425110	0.89[JPT][hapmap]
rs442486	0.89[JPT][hapmap]
rs448003	0.86[JPT][hapmap]
rs450133	1.00[JPT][hapmap]
rs473380	1.00[JPT][hapmap]
rs479650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs482598	0.81[ASN][1000 genomes]
rs483441	0.85[ASN][1000 genomes]
rs495796	0.85[EUR][1000 genomes]
rs503329	0.87[ASN][1000 genomes]
rs505931	0.82[EUR][1000 genomes]
rs517036	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs519797	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs527924	0.84[EUR][1000 genomes]
rs527974	0.87[ASN][1000 genomes]
rs531773	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs533097	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs536913	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs546786	0.88[CEU][hapmap]
rs547342	0.88[CEU][hapmap]
rs560520	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs567250	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs569850	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs572623	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs573657	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs580390	0.85[EUR][1000 genomes]
rs580928	0.89[JPT][hapmap]
rs638593	1.00[JPT][hapmap]
rs6671258	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6674758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7414129	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801297	chr1:76673530-76686142	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76676800-76683800	Weak transcription	Fetal Thymus	thymus

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