Variant report

Variant	rs429265
Chromosome Location	chr1:76625139-76625140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1032185	0.98[ASN][1000 genomes]
rs10873869	0.83[ASN][1000 genomes]
rs11162090	0.98[ASN][1000 genomes]
rs12139215	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12140759	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1414403	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1414406	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17098221	0.85[ASN][1000 genomes]
rs17098239	0.85[ASN][1000 genomes]
rs17098252	0.81[ASN][1000 genomes]
rs1970226	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1999734	0.83[ASN][1000 genomes]
rs2631778	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2783657	0.89[ASN][1000 genomes]
rs3011987	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3011989	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3011997	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs366497	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs370016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370908	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs371955	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs387214	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398826	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs402394	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs404652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409312	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs409979	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs425110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427172	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs430875	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs431752	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs434633	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs442486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450133	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs450636	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs450708	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs475686	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs532583	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs544010	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs603022	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs638593	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76620600-76627800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:76620800-76627800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:76621000-76625200	Weak transcription	Primary T cells from cord blood	blood
5	chr1:76621000-76626000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:76621000-76627000	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:76621000-76627600	Weak transcription	Fetal Lung	lung
8	chr1:76621000-76630600	Weak transcription	Psoas Muscle	Psoas
9	chr1:76621000-76630800	Weak transcription	Primary B cells from cord blood	blood

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