Variant report

Variant	rs2631778
Chromosome Location	chr1:76644588-76644589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10493579	1.00[YRI][hapmap]
rs12139215	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140759	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251569	1.00[YRI][hapmap]
rs1414403	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs1414406	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs1970226	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs289682	0.93[CEU][hapmap]
rs289683	0.93[CEU][hapmap]
rs2992502	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs3011987	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3011989	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3011997	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs366497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs370016	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs370808	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs370908	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs371955	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs387214	0.94[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs389899	0.93[CEU][hapmap]
rs393933	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs398826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs402394	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs404652	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs409312	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs409979	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs411398	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs413350	0.93[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs418644	0.93[CEU][hapmap]
rs423152	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs425110	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs427172	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs429265	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs430875	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431752	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs434633	1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs438166	0.93[CEU][hapmap]
rs442486	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs448003	0.93[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs450133	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs450636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs450708	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs475686	0.90[EUR][1000 genomes]
rs532583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs544010	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603022	0.94[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638593	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs681280	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs860154	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76636000-76646600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:76636600-76652800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:76643400-76644600	Enhancers	HepG2	liver
5	chr1:76643800-76651800	Weak transcription	Fetal Kidney	kidney
6	chr1:76644200-76646200	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:76644400-76651000	Weak transcription	Fetal Lung	lung

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