Variant report

Variant	rs371955
Chromosome Location	chr1:76622286-76622287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12139215	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12140759	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1414403	0.90[EUR][1000 genomes]
rs1414406	0.90[EUR][1000 genomes]
rs1970226	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2631778	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs289682	1.00[ASN][1000 genomes]
rs289683	1.00[ASN][1000 genomes]
rs2992502	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3011987	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3011989	0.88[EUR][1000 genomes]
rs3011997	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366497	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370016	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs370808	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs370908	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs387214	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389899	1.00[ASN][1000 genomes]
rs393933	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs398826	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs402394	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs404652	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs409312	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs409979	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs411398	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs413350	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs418644	1.00[ASN][1000 genomes]
rs423152	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs425110	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs427172	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429265	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs430875	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs431752	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs434633	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs438166	1.00[ASN][1000 genomes]
rs442486	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs448003	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs450133	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs450636	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs450708	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs475686	0.86[EUR][1000 genomes]
rs532583	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs544010	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs549195	1.00[ASN][1000 genomes]
rs603022	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs638593	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs681280	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs860154	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76616400-76623600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76620400-76623800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:76620400-76624000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:76620600-76627800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:76620800-76622600	Weak transcription	Fetal Brain Male	brain
7	chr1:76620800-76627800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:76621000-76623000	Weak transcription	HUVEC	blood vessel
9	chr1:76621000-76625000	Weak transcription	Spleen	Spleen
10	chr1:76621000-76625200	Weak transcription	Primary T cells from cord blood	blood
11	chr1:76621000-76626000	Weak transcription	Fetal Intestine Small	intestine
12	chr1:76621000-76627000	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:76621000-76627600	Weak transcription	Fetal Lung	lung
14	chr1:76621000-76630600	Weak transcription	Psoas Muscle	Psoas
15	chr1:76621000-76630800	Weak transcription	Primary B cells from cord blood	blood

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