Variant report

Variant	rs544010
Chromosome Location	chr1:76664917-76664918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12139215	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140759	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414403	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs1414406	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs1970226	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2631778	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3011987	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3011989	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3011997	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs366497	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs370016	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs370808	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs370908	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs371955	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs387214	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs393933	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs398826	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs402394	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs404652	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs409312	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs409979	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs411398	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs413350	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs423152	0.81[CEU][hapmap]
rs425110	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs427172	0.92[EUR][1000 genomes]
rs429265	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs430875	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431752	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs434633	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442486	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs448003	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs450133	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs450636	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs450708	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs475686	0.88[EUR][1000 genomes]
rs517036	0.83[CEU][hapmap]
rs532583	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs567250	0.83[CEU][hapmap]
rs603022	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638593	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76663000-76667600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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