Variant report

Variant	rs409312
Chromosome Location	chr1:76633552-76633553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1032185	0.90[ASN][1000 genomes]
rs10873869	0.90[ASN][1000 genomes]
rs11162090	0.90[ASN][1000 genomes]
rs12139215	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12140759	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1414403	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1414406	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17098221	0.83[ASN][1000 genomes]
rs17098239	0.83[ASN][1000 genomes]
rs17098252	0.88[ASN][1000 genomes]
rs17098360	0.85[ASN][1000 genomes]
rs1970226	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999734	0.90[ASN][1000 genomes]
rs2631778	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2783657	0.82[ASN][1000 genomes]
rs3011987	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3011989	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3011997	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs366497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs370016	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs370808	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs370908	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs371955	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs387214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393933	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs398826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs402394	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs404652	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs409979	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs411398	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs413350	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs425110	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs427172	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs429265	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs430875	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs431752	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs434633	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs442486	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs448003	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs450133	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs450636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs450708	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs475686	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs532583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs544010	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs603022	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs638593	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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