Variant report

Variant	rs1503364
Chromosome Location	chr8:68434969-68434970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1032815	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10957388	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11776371	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11779485	0.96[CEU][hapmap]
rs11779486	0.91[CEU][hapmap]
rs11781706	0.86[EUR][1000 genomes]
rs13251265	0.86[EUR][1000 genomes]
rs13263838	0.87[EUR][1000 genomes]
rs13271535	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13276447	0.87[EUR][1000 genomes]
rs13278805	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1393898	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1393899	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1393900	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1393901	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1393902	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1393903	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1503363	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs1503365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503366	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503368	0.86[EUR][1000 genomes]
rs1503369	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16933333	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs17429185	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1827524	0.93[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1875714	0.96[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1994221	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34397090	0.86[EUR][1000 genomes]
rs34709633	0.86[EUR][1000 genomes]
rs34860297	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35007850	0.86[EUR][1000 genomes]
rs35392939	0.86[EUR][1000 genomes]
rs35523866	0.86[EUR][1000 genomes]
rs4737834	0.96[CEU][hapmap]
rs4737835	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs4737838	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs60625302	0.86[EUR][1000 genomes]
rs6472309	0.88[EUR][1000 genomes]
rs6472312	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs66468629	0.88[EUR][1000 genomes]
rs67614695	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6994135	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6996113	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008297	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7010517	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7014478	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7815069	0.86[EUR][1000 genomes]
rs7820882	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7821010	0.88[EUR][1000 genomes]
rs7821161	0.89[CEU][hapmap]
rs7821969	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822207	0.89[CEU][hapmap]
rs7827961	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs905529	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68424800-68435000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:68433800-68435400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:68434000-68435200	Flanking Active TSS	NHEK	skin
4	chr8:68434000-68435400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:68434200-68435200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chr8:68434200-68435200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:68434400-68435200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:68434400-68435200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:68434400-68435200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:68434400-68435200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:68434600-68435200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:68434800-68435200	Flanking Active TSS	HMEC	breast

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