Variant report

Variant	rs66468629
Chromosome Location	chr8:68395457-68395458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68254471..68257183-chr8:68393983..68396548,2	MCF-7	breast:
2	chr8:68254512..68256428-chr8:68394925..68396689,2	MCF-7	breast:
3	chr8:68385385..68387759-chr8:68394153..68396040,2	K562	blood:

Variant related genes	Relation type
ENSG00000271966	Chromatin interaction
ENSG00000066777	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1032815	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957388	0.82[EUR][1000 genomes]
rs11776371	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11779485	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11779486	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11780191	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11781706	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13251265	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13263838	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271535	0.86[EUR][1000 genomes]
rs13276447	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13278805	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393898	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393899	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393900	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393901	0.82[EUR][1000 genomes]
rs1393902	0.82[EUR][1000 genomes]
rs1393903	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1503363	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1503364	0.88[EUR][1000 genomes]
rs1503365	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1503366	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1503368	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1503369	0.82[EUR][1000 genomes]
rs16933333	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429185	0.87[EUR][1000 genomes]
rs1827524	0.82[EUR][1000 genomes]
rs1875714	0.82[EUR][1000 genomes]
rs1994221	0.86[EUR][1000 genomes]
rs2014477	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34035500	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34371052	0.87[EUR][1000 genomes]
rs34397090	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34709633	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34860297	0.86[EUR][1000 genomes]
rs35007850	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35392939	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35523866	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4737834	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4737835	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4737838	0.82[EUR][1000 genomes]
rs60625302	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6472309	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472312	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67614695	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6994135	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996113	0.87[EUR][1000 genomes]
rs7008297	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7010517	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014478	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7815069	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7820882	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821010	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821161	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7821969	0.89[EUR][1000 genomes]
rs7822207	0.89[EUR][1000 genomes]
rs7827961	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834690	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs905529	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68390600-68402400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr8:68394600-68398400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:68394600-68401800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:68395000-68396200	Enhancers	Primary neutrophils fromperipheralblood	blood

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