Variant report

Variant	rs34860297
Chromosome Location	chr8:68436547-68436548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68431522..68433668-chr8:68435634..68437252,2	K562	blood:
2	chr8:68436155..68438331-chr8:68440056..68442151,2	MCF-7	breast:
3	chr8:68436129..68437691-chr8:68438991..68441114,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1032815	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10957388	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11776371	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11781706	0.84[EUR][1000 genomes]
rs13251265	0.84[EUR][1000 genomes]
rs13263838	0.84[EUR][1000 genomes]
rs13271535	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276447	0.85[EUR][1000 genomes]
rs13278805	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1393898	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1393899	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1393900	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1393901	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1393902	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1393903	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1503364	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503365	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503366	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1503368	0.84[EUR][1000 genomes]
rs1503369	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16933333	0.86[EUR][1000 genomes]
rs17429185	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827524	0.86[EUR][1000 genomes]
rs1875714	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1994221	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34397090	0.84[EUR][1000 genomes]
rs34709633	0.84[EUR][1000 genomes]
rs35007850	0.84[EUR][1000 genomes]
rs35392939	0.84[EUR][1000 genomes]
rs35523866	0.84[EUR][1000 genomes]
rs4737835	0.84[EUR][1000 genomes]
rs4737838	0.86[EUR][1000 genomes]
rs60625302	0.84[EUR][1000 genomes]
rs6472309	0.85[EUR][1000 genomes]
rs66468629	0.86[EUR][1000 genomes]
rs67614695	0.87[EUR][1000 genomes]
rs6994135	0.81[EUR][1000 genomes]
rs6996113	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008297	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7010517	0.82[EUR][1000 genomes]
rs7815069	0.84[EUR][1000 genomes]
rs7820882	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7821010	0.85[EUR][1000 genomes]
rs7821969	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827961	0.88[EUR][1000 genomes]
rs905529	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68435200-68437400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links