Variant report

Variant	rs35392939
Chromosome Location	chr8:68381428-68381429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68374251..68375769-chr8:68379292..68381430,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1032815	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10957388	0.81[EUR][1000 genomes]
rs11776371	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11779485	0.89[EUR][1000 genomes]
rs11779486	0.89[EUR][1000 genomes]
rs11780191	0.89[EUR][1000 genomes]
rs11781706	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13251265	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263838	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13271535	0.84[EUR][1000 genomes]
rs13276447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278805	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1393898	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1393899	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1393900	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1393901	0.81[EUR][1000 genomes]
rs1393902	0.80[EUR][1000 genomes]
rs1393903	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1503363	0.86[EUR][1000 genomes]
rs1503364	0.86[EUR][1000 genomes]
rs1503365	0.84[EUR][1000 genomes]
rs1503366	0.84[EUR][1000 genomes]
rs1503368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503369	0.80[EUR][1000 genomes]
rs16933333	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17429185	0.85[EUR][1000 genomes]
rs1827524	0.81[EUR][1000 genomes]
rs1875714	0.81[EUR][1000 genomes]
rs1994221	0.84[EUR][1000 genomes]
rs2014477	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34035500	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34371052	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34397090	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34709633	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34860297	0.84[EUR][1000 genomes]
rs35007850	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35523866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737834	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4737835	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737838	0.81[EUR][1000 genomes]
rs60625302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472309	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6472312	0.86[EUR][1000 genomes]
rs66468629	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67614695	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6994135	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6996113	0.85[EUR][1000 genomes]
rs7008297	0.87[EUR][1000 genomes]
rs7010517	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7014478	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7815069	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7820882	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7821010	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7821161	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7821969	0.87[EUR][1000 genomes]
rs7822207	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7827961	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7834690	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs905529	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv972539	chr8:68379241-68387366	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68370200-68390200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:68379200-68382000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:68379800-68382000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:68380400-68381600	Weak transcription	Monocytes-CD14+_RO01746	blood

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