Variant report

Variant	rs1503920
Chromosome Location	chr3:105684092-105684093
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13062637	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17193380	0.86[EUR][1000 genomes]
rs2455889	0.96[ASN][1000 genomes]
rs2455890	0.96[ASN][1000 genomes]
rs2455891	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470696	0.96[ASN][1000 genomes]
rs2470711	0.85[ASN][1000 genomes]
rs2618329	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2971344	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3110593	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4498074	0.96[ASN][1000 genomes]
rs4894964	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427688	0.82[ASN][1000 genomes]
rs7609898	0.84[ASN][1000 genomes]
rs7635557	0.99[ASN][1000 genomes]
rs9878140	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105677600-105689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:105677800-105684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:105681800-105686000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:105682000-105685800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:105682400-105684600	Weak transcription	Ovary	ovary
6	chr3:105682400-105685800	Weak transcription	Hela-S3	cervix
7	chr3:105683600-105685000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:105683600-105686800	Enhancers	Osteobl	bone
9	chr3:105683800-105686600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:105683800-105686800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:105683800-105686800	Enhancers	NHDF-Ad	bronchial
12	chr3:105684000-105685200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:105684000-105686600	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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