Variant report

Variant	rs2971344
Chromosome Location	chr3:105685899-105685900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13062637	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503920	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17193380	0.87[EUR][1000 genomes]
rs2455889	0.91[ASN][1000 genomes]
rs2455890	0.91[ASN][1000 genomes]
rs2455891	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470696	0.91[ASN][1000 genomes]
rs2470711	0.81[ASN][1000 genomes]
rs2618329	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110593	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4498074	0.92[ASN][1000 genomes]
rs4894964	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7609898	0.80[ASN][1000 genomes]
rs7635557	0.95[ASN][1000 genomes]
rs9878140	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105677600-105689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:105681800-105686000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:105683600-105686800	Enhancers	Osteobl	bone
4	chr3:105683800-105686600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:105683800-105686800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:105683800-105686800	Enhancers	NHDF-Ad	bronchial
7	chr3:105684000-105686600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:105684400-105686800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:105684600-105686000	Weak transcription	Fetal Lung	lung
10	chr3:105684600-105686000	Weak transcription	HMEC	breast
11	chr3:105684800-105686000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:105684800-105686000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:105684800-105689000	Weak transcription	Adipose Nuclei	Adipose
14	chr3:105685000-105686000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:105685000-105686000	Weak transcription	Fetal Stomach	stomach
16	chr3:105685000-105689000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:105685400-105686200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:105685600-105686200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:105685800-105686200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:105685800-105686400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr3:105685800-105686400	Enhancers	Fetal Kidney	kidney
22	chr3:105685800-105686600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:105685800-105686600	Enhancers	A549	lung
24	chr3:105685800-105686800	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links