Variant report

Variant	rs9878140
Chromosome Location	chr3:105677262-105677263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13062637	0.88[ASN][1000 genomes]
rs1503920	0.95[ASN][1000 genomes]
rs2455889	0.98[ASN][1000 genomes]
rs2455890	0.98[ASN][1000 genomes]
rs2455891	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470696	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2470711	0.87[ASN][1000 genomes]
rs2618329	0.88[ASN][1000 genomes]
rs2971344	0.90[ASN][1000 genomes]
rs3110593	0.87[ASN][1000 genomes]
rs4498074	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4894964	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7427688	0.84[ASN][1000 genomes]
rs7609898	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7635557	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105670400-105679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:105675400-105677800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:105675600-105678600	Enhancers	Placenta	Placenta
4	chr3:105676000-105678000	Enhancers	HMEC	breast
5	chr3:105676200-105677400	Enhancers	NHDF-Ad	bronchial
6	chr3:105676200-105677600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:105676200-105677800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:105676200-105677800	Enhancers	Osteobl	bone
9	chr3:105676400-105677400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:105676400-105677800	Enhancers	NHEK	skin
11	chr3:105676600-105679000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:105677200-105677800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:105677200-105678000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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