Variant report

Variant	rs7609898
Chromosome Location	chr3:105673641-105673642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1503920	0.85[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs2455889	0.89[ASN][1000 genomes]
rs2455890	0.89[ASN][1000 genomes]
rs2455891	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2470696	0.89[ASN][1000 genomes]
rs2470711	0.96[ASN][1000 genomes]
rs2971344	0.80[ASN][1000 genomes]
rs4498074	0.88[ASN][1000 genomes]
rs4894964	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7427688	0.93[ASN][1000 genomes]
rs7635557	0.85[ASN][1000 genomes]
rs9878140	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105663200-105674600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:105666000-105676200	Weak transcription	Osteobl	bone
3	chr3:105667200-105676200	Weak transcription	NHDF-Ad	bronchial
4	chr3:105670400-105679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:105673200-105676200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:105673200-105676400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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