Variant report

Variant	rs1505671
Chromosome Location	chr4:62114596-62114597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10007586	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018940	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1032893	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10446785	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10446793	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11726319	0.85[ASN][1000 genomes]
rs13149889	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1505672	0.99[ASN][1000 genomes]
rs1505674	0.93[ASN][1000 genomes]
rs1505675	0.93[ASN][1000 genomes]
rs1546380	0.86[ASN][1000 genomes]
rs17238918	0.85[ASN][1000 genomes]
rs1857823	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2342485	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28531374	0.86[ASN][1000 genomes]
rs4860402	0.99[ASN][1000 genomes]
rs66697178	0.92[ASN][1000 genomes]
rs66792191	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180300	0.99[ASN][1000 genomes]
rs974539	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs974540	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs974541	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs982333	0.92[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62111400-62120000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62112000-62115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:62112000-62116800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:62112000-62120800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62112200-62114600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:62112200-62114800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:62112200-62115200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:62112200-62115600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:62112200-62118400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:62112200-62124000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:62112800-62116000	Enhancers	Brain Substantia Nigra	brain
13	chr4:62112800-62119200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:62113200-62115000	Weak transcription	Brain Angular Gyrus	brain
15	chr4:62114000-62114600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:62114000-62114600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:62114200-62114800	Enhancers	Brain Hippocampus Middle	brain
18	chr4:62114400-62114600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:62114400-62114800	Flanking Active TSS	Brain Anterior Caudate	brain

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