Variant report

Variant	rs974540
Chromosome Location	chr4:62121179-62121180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10007586	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10018940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10446785	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10446793	0.90[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11726319	0.83[ASN][1000 genomes]
rs13149889	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1505671	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1505672	0.98[ASN][1000 genomes]
rs1505674	0.96[ASN][1000 genomes]
rs1505675	0.96[ASN][1000 genomes]
rs1546380	0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs17238918	0.92[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs1857823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342485	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28531374	0.88[ASN][1000 genomes]
rs4860402	0.98[ASN][1000 genomes]
rs66697178	0.94[ASN][1000 genomes]
rs66792191	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8180300	0.98[ASN][1000 genomes]
rs974539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974541	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982333	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62112200-62124000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62116000-62127000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:62116400-62121400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:62119200-62121400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:62119800-62127400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:62120600-62121600	Weak transcription	Brain Angular Gyrus	brain
8	chr4:62120600-62126000	Weak transcription	Brain Substantia Nigra	brain
9	chr4:62120600-62126600	Weak transcription	Brain Anterior Caudate	brain
10	chr4:62121000-62121600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:62121000-62125400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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