Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10007586	0.86[ASN][1000 genomes]
rs10018940	0.87[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1032893	0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10446785	0.92[ASN][1000 genomes]
rs10446793	0.93[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs13149889	0.87[ASN][1000 genomes]
rs1505671	0.86[ASN][1000 genomes]
rs1505672	0.87[ASN][1000 genomes]
rs1505674	0.93[ASN][1000 genomes]
rs1505675	0.93[ASN][1000 genomes]
rs17238918	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17828306	0.85[JPT][hapmap]
rs1857823	0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2202499	0.88[ASN][1000 genomes]
rs2342485	0.89[ASN][1000 genomes]
rs28531374	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4860402	0.87[ASN][1000 genomes]
rs6551620	0.83[ASN][1000 genomes]
rs66697178	0.93[ASN][1000 genomes]
rs66792191	0.86[ASN][1000 genomes]
rs7435420	0.81[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs8180300	0.87[ASN][1000 genomes]
rs974539	0.89[ASN][1000 genomes]
rs974540	0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs974541	0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs982333	0.93[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62136200-62147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:62141400-62151000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:62141600-62150600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:62144000-62148600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62144400-62149200	Weak transcription	Brain Substantia Nigra	brain

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