Variant report

Variant	rs6551620
Chromosome Location	chr4:62161216-62161217
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1505662	0.81[ASN][1000 genomes]
rs1505676	0.81[ASN][1000 genomes]
rs1505677	0.81[ASN][1000 genomes]
rs1546380	0.83[ASN][1000 genomes]
rs17238918	0.81[ASN][1000 genomes]
rs2202499	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2342456	0.81[ASN][1000 genomes]
rs28531374	0.84[ASN][1000 genomes]
rs3860621	0.81[ASN][1000 genomes]
rs7435420	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7683030	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
2	chr4:62156600-62161600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:62158800-62161400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:62158800-62161400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62158800-62161600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:62159000-62161800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:62159000-62164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:62159000-62167200	Weak transcription	Brain Substantia Nigra	brain
10	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:62160000-62161400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:62160600-62162400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:62160600-62169000	Weak transcription	Brain Angular Gyrus	brain
16	chr4:62160800-62162000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:62160800-62162200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:62160800-62162400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:62160800-62164000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:62160800-62167000	Weak transcription	Fetal Lung	lung

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