Variant report

Variant	rs2342456
Chromosome Location	chr4:62124053-62124054
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10009341	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10446785	0.82[ASN][1000 genomes]
rs10446793	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1505662	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1505674	0.82[ASN][1000 genomes]
rs1505675	0.82[ASN][1000 genomes]
rs1505676	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1505677	0.83[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2202499	0.85[ASN][1000 genomes]
rs3860621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6551620	0.81[ASN][1000 genomes]
rs66697178	0.80[ASN][1000 genomes]
rs7435420	0.94[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7683030	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs982333	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs9995267	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417367	chr4:62123807-62124176	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62116000-62127000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:62119800-62127400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:62120600-62126000	Weak transcription	Brain Substantia Nigra	brain
5	chr4:62120600-62126600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:62121000-62125400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62122000-62128200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:62122400-62126200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:62123400-62124600	Enhancers	Fetal Heart	heart
10	chr4:62123800-62124200	Enhancers	Fetal Muscle Leg	muscle
11	chr4:62124000-62124400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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