Variant report

Variant	rs1505662
Chromosome Location	chr4:62131305-62131306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10446785	0.80[ASN][1000 genomes]
rs10446793	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1505674	0.81[ASN][1000 genomes]
rs1505675	0.81[ASN][1000 genomes]
rs1505676	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202499	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2342456	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3860621	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3860622	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6551620	0.81[ASN][1000 genomes]
rs66697178	0.82[ASN][1000 genomes]
rs7435420	0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7683030	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs982333	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9995267	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128000-62133000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:62128400-62133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:62129200-62134000	Enhancers	Brain Anterior Caudate	brain
5	chr4:62129400-62131600	Enhancers	Brain Substantia Nigra	brain
6	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:62129800-62132000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:62129800-62133000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:62130200-62134800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:62130600-62132000	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:62130600-62134800	Weak transcription	Fetal Heart	heart
12	chr4:62130800-62134600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:62131000-62131600	Enhancers	Brain Angular Gyrus	brain
14	chr4:62131000-62134200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:62131000-62134800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:62131200-62134000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:62131200-62134600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:62131200-62134600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:62131200-62135000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:62131200-62135000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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