Variant report

Variant	rs7435420
Chromosome Location	chr4:62150059-62150060
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10446793	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs1505662	0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1505674	0.80[ASN][1000 genomes]
rs1505675	0.80[ASN][1000 genomes]
rs1505676	0.85[ASN][1000 genomes]
rs1505677	0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1546380	0.81[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17238918	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2202499	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2342456	0.94[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs28531374	0.88[ASN][1000 genomes]
rs3860621	0.84[ASN][1000 genomes]
rs3860622	0.83[ASN][1000 genomes]
rs6551620	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66697178	0.80[ASN][1000 genomes]
rs7683030	0.85[ASN][1000 genomes]
rs982333	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs9995267	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62141400-62151000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:62141600-62150600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:62149400-62151000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:62149400-62151200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:62149800-62151200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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