Variant report

Variant	rs2202499
Chromosome Location	chr4:62145976-62145977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10446785	0.80[ASN][1000 genomes]
rs10446793	0.80[ASN][1000 genomes]
rs1505662	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1505674	0.81[ASN][1000 genomes]
rs1505675	0.81[ASN][1000 genomes]
rs1505676	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1505677	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1546380	0.88[ASN][1000 genomes]
rs17238918	0.86[ASN][1000 genomes]
rs2342456	0.85[ASN][1000 genomes]
rs28531374	0.87[ASN][1000 genomes]
rs3860621	0.85[ASN][1000 genomes]
rs3860622	0.83[ASN][1000 genomes]
rs6551620	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66697178	0.81[ASN][1000 genomes]
rs7435420	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7683030	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs982333	0.81[ASN][1000 genomes]
rs9995267	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62136200-62147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:62141400-62151000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:62141600-62150600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:62144000-62148600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62144400-62149200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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