Variant report

Variant	rs982333
Chromosome Location	chr4:62128096-62128097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10007586	0.92[ASN][1000 genomes]
rs10018940	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1032893	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10446785	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10446793	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11726319	0.81[ASN][1000 genomes]
rs13149889	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1505662	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1505671	0.92[ASN][1000 genomes]
rs1505672	0.93[ASN][1000 genomes]
rs1505674	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1505675	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1505676	0.82[ASN][1000 genomes]
rs1505677	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1546380	0.93[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs17238918	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs17828306	0.81[JPT][hapmap]
rs1857823	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2202499	0.81[ASN][1000 genomes]
rs2342456	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2342485	0.94[ASN][1000 genomes]
rs28531374	0.92[ASN][1000 genomes]
rs3860621	0.80[ASN][1000 genomes]
rs4860402	0.93[ASN][1000 genomes]
rs66697178	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66792191	0.92[ASN][1000 genomes]
rs7435420	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7683030	0.81[ASN][1000 genomes]
rs8180300	0.93[ASN][1000 genomes]
rs974539	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs974540	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs974541	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62122000-62128200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:62124600-62129200	Weak transcription	Fetal Heart	heart
4	chr4:62127200-62128200	Active TSS	Brain Anterior Caudate	brain
5	chr4:62127600-62128400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:62127600-62129400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62127800-62128200	Enhancers	Brain Hippocampus Middle	brain
8	chr4:62127800-62128200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:62128000-62129400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:62128000-62129400	Weak transcription	Brain Substantia Nigra	brain
11	chr4:62128000-62129800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:62128000-62131000	Weak transcription	Brain Angular Gyrus	brain
13	chr4:62128000-62133000	Weak transcription	Brain Cingulate Gyrus	brain

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