Variant report
| Variant | rs1513520 |
|---|---|
| Chromosome Location | chr8:114457117-114457118 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:52209488..52211712-chr8:114454464..114457142,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000171940 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10108963 | 0.87[CHB][hapmap] |
| rs1055168 | 0.91[CHB][hapmap];0.87[TSI][hapmap] |
| rs1478679 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16884700 | 0.82[JPT][hapmap] |
| rs16892653 | 0.82[ASN][1000 genomes] |
| rs1949225 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2279160 | 0.91[CHB][hapmap] |
| rs2927867 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2927875 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2942849 | 0.91[CHB][hapmap] |
| rs2942850 | 0.91[CHB][hapmap] |
| rs2942854 | 0.86[ASN][1000 genomes] |
| rs2954885 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2954900 | 0.87[CHB][hapmap] |
| rs4565485 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6469456 | 0.87[CHB][hapmap];0.82[TSI][hapmap] |
| rs6982808 | 0.87[CHB][hapmap] |
| rs72673263 | 0.81[ASN][1000 genomes] |
| rs7828293 | 0.87[CHB][hapmap];0.82[TSI][hapmap] |
| rs7831926 | 0.87[CHB][hapmap] |
| rs922467 | 0.91[CHB][hapmap] |
| rs938248 | 0.86[CHB][hapmap] |
| rs9886503 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817379 | chr8:114338391-115011632 | Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2754463 | chr8:114353649-114501547 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2761461 | chr8:114420164-114462173 | Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv831429 | chr8:114438561-114595565 | Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
