Variant report

Variant	rs9886503
Chromosome Location	chr8:114528445-114528446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10108963	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[YRI][hapmap]
rs1055168	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs11786953	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1478679	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1513520	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1949225	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2279160	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap]
rs2927867	0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs2927875	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2942849	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap]
rs2942850	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[YRI][hapmap]
rs2942854	0.82[EUR][1000 genomes]
rs2954885	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2954900	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[YRI][hapmap]
rs4565485	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55703524	0.81[ASN][1000 genomes]
rs55935867	0.81[ASN][1000 genomes]
rs62520075	0.82[ASN][1000 genomes]
rs6469456	0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[YRI][hapmap]
rs6982808	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[YRI][hapmap]
rs6993017	0.95[CEU][hapmap]
rs7828293	0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[YRI][hapmap]
rs7831926	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[YRI][hapmap]
rs922467	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap]
rs938248	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831429	chr8:114438561-114595565	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114527600-114528600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links