Variant report
| Variant | rs6993017 |
|---|---|
| Chromosome Location | chr8:114421092-114421093 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10105596 | 0.80[CHB][hapmap] |
| rs10108963 | 0.96[CEU][hapmap] |
| rs1055168 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10955657 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11786953 | 0.81[EUR][1000 genomes] |
| rs1478679 | 0.82[EUR][1000 genomes] |
| rs1513516 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1513527 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1551958 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1949225 | 0.81[EUR][1000 genomes] |
| rs2279160 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2356480 | 0.82[CEU][hapmap];0.88[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs2927875 | 0.82[EUR][1000 genomes] |
| rs2942849 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2942850 | 0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2942854 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2954885 | 0.81[EUR][1000 genomes] |
| rs2954900 | 0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4565485 | 0.81[EUR][1000 genomes] |
| rs6469456 | 0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6982808 | 0.96[CEU][hapmap] |
| rs7828293 | 0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7831926 | 0.96[CEU][hapmap] |
| rs899299 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs922467 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs938248 | 0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817379 | chr8:114338391-115011632 | Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2754463 | chr8:114353649-114501547 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv1803306 | chr8:114406930-114423622 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1034533 | chr8:114413358-114436712 | Enhancers Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1020674 | chr8:114413358-114439498 | Flanking Active TSS Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv2761461 | chr8:114420164-114462173 | Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
