Variant report

Variant	rs1478679
Chromosome Location	chr8:114458853-114458854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10108963	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[YRI][hapmap]
rs1055168	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10955657	0.80[EUR][1000 genomes]
rs11786953	0.84[EUR][1000 genomes]
rs1513516	0.80[EUR][1000 genomes]
rs1513520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513527	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16884700	0.82[JPT][hapmap]
rs16892653	0.82[ASN][1000 genomes]
rs1949225	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279160	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2927867	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2927875	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2942849	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2942850	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2942854	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2954885	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2954900	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4565485	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469456	0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[YRI][hapmap];0.81[EUR][1000 genomes]
rs6982808	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[YRI][hapmap]
rs6993017	0.96[CEU][hapmap]
rs72673263	0.81[ASN][1000 genomes]
rs7828293	0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[YRI][hapmap]
rs7831926	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[YRI][hapmap]
rs899299	0.82[EUR][1000 genomes]
rs922467	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs938248	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap];0.86[EUR][1000 genomes]
rs9886503	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2761461	chr8:114420164-114462173	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831429	chr8:114438561-114595565	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114458600-114460600	Weak transcription	Fetal Muscle Leg	muscle

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