Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10105596	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10108963	0.96[CEU][hapmap]
rs1055168	0.96[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1478679	0.84[EUR][1000 genomes]
rs1513520	0.83[TSI][hapmap]
rs1949225	0.83[EUR][1000 genomes]
rs2279160	0.96[CEU][hapmap]
rs2356480	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs2927875	0.84[EUR][1000 genomes]
rs2942849	0.96[CEU][hapmap]
rs2942850	0.96[CEU][hapmap]
rs2954885	0.86[EUR][1000 genomes]
rs2954900	0.96[CEU][hapmap]
rs4242557	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4565485	0.86[EUR][1000 genomes]
rs6469456	0.89[CEU][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs6982808	0.96[CEU][hapmap]
rs6993017	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[YRI][hapmap]
rs7820153	0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap]
rs7828293	0.89[CEU][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs7831926	0.96[CEU][hapmap]
rs922467	0.96[CEU][hapmap]
rs938248	0.96[CEU][hapmap]
rs9886503	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831429	chr8:114438561-114595565	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891332	chr8:114532488-114667112	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114530600-114536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:114532600-114534600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr8:114532600-114534800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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