Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103087475..103090012-chr4:103094577..103097148,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs151387	0.91[ASN][1000 genomes]
rs151478	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs151483	0.86[ASN][1000 genomes]
rs236743	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs236744	0.89[ASN][1000 genomes]
rs236746	0.86[ASN][1000 genomes]
rs236748	0.99[ASN][1000 genomes]
rs236749	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236750	0.88[ASN][1000 genomes]
rs236751	0.90[ASN][1000 genomes]
rs236753	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs236771	0.91[ASN][1000 genomes]
rs236772	0.91[ASN][1000 genomes]
rs236773	0.89[ASN][1000 genomes]
rs238450	0.96[ASN][1000 genomes]
rs238455	0.86[ASN][1000 genomes]
rs238457	0.86[ASN][1000 genomes]
rs238458	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs238459	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs238460	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs424277	0.84[ASN][1000 genomes]
rs439538	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103095600-103096800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:103095600-103096800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:103096400-103101000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:103096400-103101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:103096400-103105800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:103096600-103101000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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